Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

GCT Seminoma Korkola Cluster Number 42 (108 genes) This page contains all miRNA mediated regulation and functional enrichment for GCT Seminoma Korkola cluster number 42. Information about seminoma can be found on Wikipedia, and further information about the "GCT Seminoma Korkola" dataset can be found in Korkola et al., 2006. Inferred miRNA Mediated Regulation Weeder-miRvestigator PITA TargetScan hsa-mir-1181 hsa-mir-149 hsa-mir-637 Gene Ontology Enrichment GO ID GO Term Annotated Genes in Cluster GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 53 GO:0006364 rRNA processing 9 GO:0006396 RNA processing 20 GO:0016072 rRNA metabolic process 9 GO:0022613 ribonucleoprotein complex biogenesis 11 GO:0034470 ncRNA processing 10 GO:0034660 ncRNA metabolic process 11 GO:0042254 ribosome biogenesis 11 GO:0043170 macromolecule metabolic process 64 GO:0044260 cellular macromolecule metabolic process 61 Overlap Between miRNA Target Genes and Enriched Gene Ontology Annotations miRNA Method GO ID GO Term Overlap GO Annotated Genes Cluster Size miRNA Targets Genes P-Value hsa-mir-637 TargetScan GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 18 53 108 35 0.2930982 hsa-mir-149 PITA GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3 53 108 5 0.170227 hsa-mir-1181 miRvestigator GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 45 53 108 86 0.05679163 hsa-mir-637 TargetScan GO:0006364 rRNA processing 2 9 108 35 0.6070408 hsa-mir-149 PITA GO:0006364 rRNA processing 0 9 108 5 0.3583594 hsa-mir-1181 miRvestigator GO:0006364 rRNA processing 9 9 108 86 0.0 hsa-mir-637 TargetScan GO:0006396 RNA processing 5 20 108 35 0.6925332 hsa-mir-149 PITA GO:0006396 RNA processing 1 20 108 5 0.2301589 hsa-mir-1181 miRvestigator GO:0006396 RNA processing 18 20 108 86 0.04715906 hsa-mir-637 TargetScan GO:0016072 rRNA metabolic process 2 9 108 35 0.6070408 hsa-mir-149 PITA GO:0016072 rRNA metabolic process 0 9 108 5 0.3583594 hsa-mir-1181 miRvestigator GO:0016072 rRNA metabolic process 9 9 108 86 0.0 hsa-mir-637 TargetScan GO:0022613 ribonucleoprotein complex biogenesis 2 11 108 35 0.7592109 hsa-mir-149 PITA GO:0022613 ribonucleoprotein complex biogenesis 0 11 108 5 0.4218489 hsa-mir-1181 miRvestigator GO:0022613 ribonucleoprotein complex biogenesis 11 11 108 86 0.0 hsa-mir-637 TargetScan GO:0034470 ncRNA processing 2 10 108 35 0.6896595 hsa-mir-149 PITA GO:0034470 ncRNA processing 0 10 108 5 0.3907655 hsa-mir-1181 miRvestigator GO:0034470 ncRNA processing 10 10 108 86 0.0 hsa-mir-637 TargetScan GO:0034660 ncRNA metabolic process 3 11 108 35 0.5041891 hsa-mir-149 PITA GO:0034660 ncRNA metabolic process 0 11 108 5 0.4218489 hsa-mir-1181 miRvestigator GO:0034660 ncRNA metabolic process 10 11 108 86 0.07091426 hsa-mir-637 TargetScan GO:0042254 ribosome biogenesis 2 11 108 35 0.7592109 hsa-mir-149 PITA GO:0042254 ribosome biogenesis 0 11 108 5 0.4218489 hsa-mir-1181 miRvestigator GO:0042254 ribosome biogenesis 11 11 108 86 0.0 hsa-mir-637 TargetScan GO:0043170 macromolecule metabolic process 23 64 108 35 0.1237403 hsa-mir-149 PITA GO:0043170 macromolecule metabolic process 4 64 108 5 0.06840018 hsa-mir-1181 miRvestigator GO:0043170 macromolecule metabolic process 53 64 108 86 0.1092277 hsa-mir-637 TargetScan GO:0044260 cellular macromolecule metabolic process 22 61 108 35 0.1284147 hsa-mir-149 PITA GO:0044260 cellular macromolecule metabolic process 4 61 108 5 0.05337033 hsa-mir-1181 miRvestigator GO:0044260 cellular macromolecule metabolic process 53 61 108 86 0.008846642

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.